doc. Mgr. David Bednář, Ph.D.

2022

• Multiple Substrate Binding Mode-Guided Engineering of a Thermophilic PET Hydrolase

  PFAFF Lara GAO Jian LI Zhishuai JAECKERING Anna WEBER Gert MIČAN Jan CHEN Yinping DONG Weiliang HAN Xu FEILER Christian G. AO Yu-Fei BADENHORST Christoffel P. S. BEDNÁŘ David PALM Gottfried J. LAMMERS Michael DAMBORSKÝ Jiří STRODEL Birgit LIU Weidong BORNSCHEUER Uwe T. WEI Ren

  Article in Periodical

  ACS Catalysis, year: 2022, volume: 12, edition: 15, DOI

• Nástroj LoopGrafter

  PLANAS IGLESIAS Joan OPÁLENÝ Filip ULBRICH Pavol ŠTOURAČ Jan SANUSI Zainab Kemi RANGEL PAMPLONA PIZARRO PINTO José Gaspar SCHENKMAYEROVÁ A. BYŠKA Jan DAMBORSKÝ Jiří KOZLÍKOVÁ Barbora BEDNÁŘ David

  Year: 2022, type:

• PDBe-KB: collaboratively defining the biological context of structural data

  VARADI Mihaly ANYANGO Stephen ARMSTRONG David BERRISFORD John CHOUDHARY Preeti DESHPANDE Mandar NADZIRIN Nurul NAIR Sreenatha S. PRAVDA Lukas TANWEER Ahsan AL-LAZIKANI Bissan ANDREINI Claudia BARTON Geoffrey J. BEDNÁŘ David BERKA Karel BLUNDELL Tom BROCK Kelly P. MARIA CARAZO Jose DAMBORSKÝ Jiří DAVID Alessia DEY Sucharita DUNBRACK Roland RECIO Fernandez Juan FRATERNALI Franca GIBSON Toby HELMER-CITTERICH Manuela HOKSZA David HOPF Thomas JAKUBEC David KANNAN Natarajan KRIVAK Radoslav KUMAR Manjeet LEVY Emmanuel D. LONDON Nir MACIAS Jose Ramon SRIVATSAN Madhusudhan M. MARKS Debora S. MARTENS Lennart MCGOWAN Stuart A. MCGREIG Jake E. MODI Vivek PARRA Gonzalo R. PEPE Gerardo PIOVESAN Damiano PRILUSKY Jaime PUTIGNANO Valeria RADUSKY Leandro G. RAMASAMY Pathmanaban RAUSCH Atilio O. REUTER Nathalie RODRIGUEZ Luis A. ROLLINS Nathan J. ROSATO Antonio SERRANO Luis SINGH Gulzar SKODA Petr SORZANO Carlos Oscar S. ŠTOURAČ Jan SULKOWSKA Joanna I. SVOBODOVÁ Radka TICHSHENKO Natalia TOSATTO Silvio C. E. VRANKEN Wim WASS Mark N. XUE Dandan ZAIDMAN Daniel THORNTON Janet STERNBERG Michael ORENGO Christine VELANKAR Sameer

  Article in Periodical

  Nucleic acids research, year: 2022, volume: 50, edition: D1, DOI

• PredictSNP Onco 1.0

  ŠTOURAČ Jan KHAN Rayyan Tariq BORKO Simeon POKORNÁ Petra DOBIÁŠ Adam RANGEL PAMPLONA PIZARRO PINTO José Gaspar ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří BEDNÁŘ David

  Year: 2022

• SoluProtMutDB: A manually curated database of protein solubility changes upon mutations

  VELECKÝ Jan HAMŠÍKOVÁ Marie ŠTOURAČ Jan MUSIL Miloš DAMBORSKÝ Jiří BEDNÁŘ David MAZURENKO Stanislav

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2022, volume: 20, edition: November 2022, DOI

• Structural Insights into (Tere)phthalate-Ester Hydrolysis by a Carboxylesterase and Its Role in Promoting PET Depolymerization

  VON HAUGWITZ Gerlis HAN Xu PFAFF Lara LI Qian WEI Hongli GAO Jian METHLING Karen AO Yufei BRACK Yannik MIČAN Jan FEILER Christian G WEISS Manfred S BEDNÁŘ David PALM Gottfried J. LALK Michael LAMMERS Michael DAMBORSKÝ Jiří WEBER Gert LIU Weidong BORNSCHEUER Uwe T. WEI Ren

  Article in Periodical

  ACS Catalysis, year: 2022, volume: 12, edition: 24, DOI

• Tools for computational design and high-throughput screening of therapeutic enzymes

  VAŠINA Michal VELECKÝ Jan PLANAS IGLESIAS Joan MARQUES Sérgio Manuel ŠKAŘUPOVÁ Jana DAMBORSKÝ Jiří BEDNÁŘ David MAZURENKO Stanislav PROKOP Zbyněk

  Article in Periodical

  ADVANCED DRUG DELIVERY REVIEWS, year: 2022, volume: 183, edition: April 2022, DOI

• Virtual screening of potential anticancer drugs based on microbial products

  RANGEL PAMPLONA PIZARRO PINTO José Gaspar HENDRIKSE Natalie M. ŠTOURAČ Jan DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Seminars in Cancer Biology, year: 2022, volume: 86, edition: November 2022, DOI

• 熱安定性ＦＧＦ２ポリペプチド及びその使用

  DVOŘÁK Petr KREJČÍ Pavel BÁLEK Lukáš EISELLEOVÁ Lívia KONEČNÁ Žaneta DVOŘÁK Pavel BEDNÁŘ David BREZOVSKÝ Jan ŠEBESTOVÁ Eva CHALOUPKOVÁ Radka ŠTĚPÁNKOVÁ Veronika VAŇÁČEK Pavel PROKOP Zbyněk DAMBORSKÝ Jiří BOSÁKOVÁ Michaela

  Patent

  Publisher: Japan Patent Office (JPO), state: Japan, patent's number: JP7131772, year: 2022

2021

• Computational design of enzymes for biotechnological applications

  PLANAS IGLESIAS Joan MARQUES Sérgio Manuel RANGEL PAMPLONA PIZARRO PINTO José Gaspar MUSIL Miloš ŠTOURAČ Jan DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Biotechnology Advances, year: 2021, volume: 47, edition: March–April, DOI