prof. RNDr. Jiří Šponer, DrSc.

2003

• Structure and Dynamics of RNA K-turn Motifs

  RÁZGA Filip ŠPAČKOVÁ Naděžda RÉBLOVÁ Kamila KOČA Jaroslav ŠPONER Jiří LEONTIS Neocles, B.

  Article in Proceedings

  RNA klub, year: 2003

2002

• Computer modelling of DNA quadruplex conformational behavior

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠPONER Jiří KOČA Jaroslav

  Article in Proceedings

  Chemické Listy, year: 2002

• DNA quadruplexes with lateral loops - molecular modelling study of conformational behavior

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠPONER Jiří KOČA Jaroslav

  Article in Proceedings

  Chemometrics VI, year: 2002

• Molecular dynamics of the 5S rRNA loop E

  RÉBLOVÁ Kamila ŠPAČKOVÁ Naděžda ŠTEFL Richard CSASZAR Kristina KOČA Jaroslav LEONTIS Neocles ŠPONER Jiří

  Article in Proceedings

  Chemometrics, year: 2002

• Molecular modelling of DNA fragment conformational behavior

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠPONER Jiří KOČA Jaroslav

  Article in Proceedings

  WATOC 02, year: 2002

2001

• Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: The role of non- Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding

  CSASZAR Kristina ŠPAČKOVÁ Naděžda ŠTEFL Richard ŠPONER Jiří LEONTIS Neocles B.

  Article in Periodical

  Journal of Molecular Biology, year: 2001, volume: 313, edition: 5

• Solution structure of the dodecamer d-(CATGGGCC-CATG)(2) is B-DNA. Experimental and molecular dynamics study

  DORNBERGER Utz ŠPAČKOVÁ Naděžda WALTER Axel GOLLMICK Friedrich A. ŠPONER Jiří FRITZSCHE hartmut

  Article in Periodical

  Journal of Biomolecular Structure and Dynamics, year: 2001, volume: 19, edition: 1

• Structural dynamics and cation interactions of DNA quadruplex molecules containing mixed guanine/cytosine quartets revealed by large-scale MD simulations

  ŠPAČKOVÁ Naděžda BERGER Imre ŠPONER Jiří

  Article in Periodical

  Journal of the American Chemical Society, year: 2001, volume: 123, edition: 14

1999

• Nanosecond molecular dynamics simulations of parallel and antiparallel guanine quadruplex DNA molecules

  ŠPAČKOVÁ Naděžda BERGER Imre ŠPONER Jiří

  Article in Periodical

  The Journal of the American Chemical Society, year: 1999, volume: roč. 121, edition: 23

1998

• Molecular dynamics of hemiprotonated intercalated four-stranded i-DNA: stable trajectories on a nanosecond scale

  ŠPAČKOVÁ Naděžda BERGER Imre EGLI Martin ŠPONER Jiří

  Article in Periodical

  The Journal of the American Chemical Society, year: 1998, volume: roč. 120, edition: 24