RNDr. Ondřej Schindler, Ph.D.

Junior researcher, Biological Data Management and Analysis Core Facility

correspondence Address:
Kamenice 753/5, 625 00 Brno

e‑mail:	Ondrej.Schindler@ceitec.muni.cz

social and academic networks:

Basic information

Type

Total number of publications: 15

2023

New ways of protein family visualization in AlphaFold era

SVOBODOVÁ Radka BERKA Karel HUTAŘOVÁ VAŘEKOVÁ Ivana RAČEK Tomáš SCHINDLER Ondřej

Appeared in Conference without Proceedings

Year: 2023, type: Appeared in Conference without Proceedings
αCharges: partial atomic charges for AlphaFold structures in high quality

SCHINDLER Ondřej BERKA Karel CANTARA Alessio KŘENEK Aleš TICHÝ Dominik RAČEK Tomáš SVOBODOVÁ Radka

Article in Periodical

Nucleic Acids Research, year: 2023, volume: 51, edition: W1, DOI

2022

Alphacharges - a web service for calculating QM-like partial atomic charges for AlphaFold proteins

SCHINDLER Ondřej RAČEK Tomáš SVOBODOVÁ Radka

Appeared in Conference without Proceedings

Year: 2022, type: Appeared in Conference without Proceedings
Atomic Charge Calculator II – a web service for calculating partial atomic charges

RAČEK Tomáš SCHINDLER Ondřej PTÁČNÍKOVÁ Lenka SVOBODOVÁ Radka

Conference abstract

Year: 2022, type: Conference abstract
Prediction of QM-like partial atomic charges for alphafold

SCHINDLER Ondřej RAČEK Tomáš SVOBODOVÁ Radka

Appeared in Conference without Proceedings

Year: 2022, type: Appeared in Conference without Proceedings
QM-like partial atomic charges for AlphaFold available online

SCHINDLER Ondřej RAČEK Tomáš JELÍNEK Kamil SVOBODOVÁ Radka

Conference abstract

Year: 2022, type: Conference abstract

2021

COMPUTER-AIDED MODEL DESIGN OF EMPIRICAL METHODS FOR CALCULATING PARTIAL ATOMIC CHARGES

RAČEK Tomáš SCHINDLER Ondřej

Article in Proceedings

MODELLING AND SIMULATION 2021: 35TH ANNUAL EUROPEAN SIMULATION AND MODELLING CONFERENCE 2021 (ESM 2021), year: 2021
Optimized SQE atomic charges for peptides accessible via a web application

SCHINDLER Ondřej RAČEK Tomáš MARŠAVELSKI Aleksandra KOČA Jaroslav BERKA Karel SVOBODOVÁ Radka

Article in Periodical

Journal of Cheminformatics, year: 2021, volume: 13, edition: 1, DOI
Partial atomic charges for proteins

SCHINDLER Ondřej RAČEK Tomáš MARŠAVELSKI Aleksandra SVOBODOVÁ Radka KOČA Jaroslav

Appeared in Conference without Proceedings

Year: 2021, type: Appeared in Conference without Proceedings
QM-like partial atomic charges for proteins available online

SCHINDLER Ondřej RAČEK Tomáš SVOBODOVÁ Radka BERKA Karel

Conference abstract

Year: 2021, type: Conference abstract